Alexander J, Balasubramanian R, Martin J, Monahan K, Pollatsek H, Sen A (2000). Ruling out (160,54,18) difference sets in some non-abelian groups, Journal of Combinatorial Designs, 8: pp. 221-231.
Balasubramanian, R., Lagakos, S. W. (2001). Estimation of timing of mother-infant transmission of HIV, Biometrics, 57, pp. 1048-1058
Balasubramanian, R., Lagakos, S. W. (2003). Estimation of time-to-event in the presence of error prone diagnostic tests, Biometrika, 90, pp. 171-182.
Balasubramanian, R., Lagakos, S. W. (2004). Analyzing time-to-event data in a clinical trial when an unknown proportion of subjects has experienced the event at entry, Biometrics, 60(2), pp. 335-343.
Balasubramanian, R.*, LaFramboise, T*, Scholtens, D*, Gentleman, R. (2004). A graph theoretic approach to testing associations between disparate sources of functional genomics data, Bioinformatics, 20 (18), pp. 3353-3362. ∗ equal contribution
Cunningham, C. K., Balasubramanian, R., Delke, I., Maupin, R., Mofenson, L., Dorenbaum, A., Sullivan, J. L., Gonzalez-Garcia, A., Thorpe, E., Rathore, M., Gelber, R. D. (2004). The Impact of Race/Ethnicity on Mother-to-Child HIV Transmission in the U.S. in Pediatric AIDS Clinical Trials Group Protocol 316, Journal of the Acquired Immune Deficiency Syndrome (JAIDS), 36 (3), pp. 800-807.
Watts, DH, Balasubramanian, R., Maupin, R, Delke, I, Cunningham, C, Dorenbaum, A, Fiore, S, Newell, ML, Delfraissy, JF, Gelber, RD, Mofenson, L, Culnane, M, Sullivan, JL for the PACTG 316 Team (2004); Maternal Toxicity and Pregnancy Outcome According to Antiretroviral Therapy during Pregnancy: An analysis of the PACTG 316 Study, American Journal of Obstetrics and Gynecology, 190 (2), pp. 506-516.
Scholtens D., Balasubramanian R. , Gentleman R. (2007); Assessing network structure in the presence of measurement error. Statistical Advances in the Biomedical Sciences, Wiley Series in Probability and Statistics.
Adourian, A, Jennings, E, Balasubramanian R., Hines WM, Damian D, Plasterer TN, Clish, CB, Stroobant, P, McBurney, R, Verheij, ER, Bobeldijk, I., van der Greef, J, Lindberg, J, Kenne, K, Andersson, U, Hellmold, H., Nilsson, K, Salter, H, Schuppe-Koistinen, I. (2008). Correlation Network Analysis for Data Integration and Biomarker Selection, Molecular Biosystems, 4, pp. 249- 259
McBurney, R.N., Hines, W.M., Von Tungeln, L.S., Schnackenberg, L.K., Beger, R.D., Moland, C.L., Han, T., Fuscoe, J.C., Chang, C., Chen, J.J., Su, Z., Fan, X., Tong, W., Booth, S.A., Balasubramanian, R., Courchesne, P.L., Campbell, J.M., Graber, A., Guo, Y., Juhasz, P., Li, T.Y., Lynch, M., Morel, N.M., Plasterer, T., Takach, E.J., Zeng, C., Beland, F.A. (2009). The Liver Toxicity Biomarker Study: Phase I Design and Preliminary Results, Toxicologic Pathology, 37 (1), pp. 52- 64.
Andersson, U., Lindberg, J., Wang, S., Balasubramanian, R., Marcusson-Sthl, M., Hannula, M., Zeng, C., Juhasz, P.J., Kolmert, J., Bckstrm, J., Nord, L., Nilsson, K., Martin, S., Glinghammar, B., Cederbrant, K., Schuppe-Koistinen, I. (2009). A systems biology approach to understanding elevated serum alanine transaminase levels in a clinical trial with ximelagatran, Biomarkers, 14 (8), pp. 572 - 586.
Adourian, A., Plasterer, T.N., Balasubramanian, R. , Jennings, E., Wang, S., van der Greef., J., McBurney, R., Muntendam, P., Afeyan, N. (2009); Systems Pharmacology, Biomarkers and Biomolecular Networks. Drug Efficacy, Safety, and Biologics Discovery: Emerging Technologies and Tools, Wiley Series on Technologies for the Pharmaceutical Industry.
Balasubramanian, R., Lagakos, S. W. (2010). Estimating HIV incidence based on combined prevalence testing, Biometrics, 66 (1), pp. 1-10.
Balasubramanian, R., Muller, L., Kugler, K., Hackl, W., Pleyer, L., Dehmer, M., Graber, A. (2010). The Impact of Storage Effects in Biobanks on Biomarker Discovery in Systems Biology Studies, Biomarkers, 15(8), pp. 677-683.
Guo, Y., Graber, A., McBurney, R.N., Balasubramanian, R. (2010). Sample size and statistical power considerations in high-dimensionality data settings: A comparative study of classification algorithms, BMC Bioinformatics, 11 (1), pp. 447.
Ma, Y., Balasubramanian, R., Schneider, K. L., Culver, A. L., Olendzki, B., Safford, M., Sepavich, D. M., Hebert, J. R., Rosal, M. C., Ockene, J. K., Tinker, L., Carnethon, M., Liu, S., Zorn, M., Pagoto, S. L. (2011). Depressive symptoms, Antidepressant Use and Diabetes in a Large Multiethnic National Sample of Postmenopausal Women, Diabetes Care, 11, pp. 2390-2392.
Giri, A., Sturgeon, S. R., Luisi, N., Bertone-Johnson, E., Balasubramanian, R., Reeves, K. W. (2011). Caffeinated coffee, decaffeinated coffee and endometrial cancer risk: A prospective cohort study among U.S. postmenopausal women, Nutrients, 3 (11), pp. 937-950.
Culver, A. L., Ockene, I. S., Balasubramanian, R., Olendzki, B. C., Sepavich, D. M., WactawskiWende, J., Manson, J. E., Qiao, Y., Liu, S., Merriam, P. A., Rahilly-Tierny, C., Thomas, F., Berger, J. S., Ockene, J. K., Curb, D. J., Ma, Y. (2012). Statin Use and Risk of Diabetes in Postmenopausal Women in the Women’s Health Initiative, Archives of Internal Medicine, 172 (2), pp. 144-152.
Guo, Y., Balasubramanian, R. (2012). Comparative evaluation of classifiers in the presence of statistical interaction between features in high-dimensionality data settings, International Journal of Biostatistics, 8 (1), Article 17.
Sturgeon, S.R., Luisi, N., Balasubramanian, R., Reeves, K. W. (2012). Sleep duration and endometrial cancer risk, Cancer Causes and Control, 23(4), pp. 547-553.
Ma, Y., Hebert, J. R., Manson, J. E., Balasubramanian, R., Liu, S., Lamonte, M., Bird, C. E., Ockene, J., Qiao, Y., Olendzki, B., Schneider, K. L., Rosal, M. C., Sepavich, D. M., WactawskiWende, J., Stefanick, M., Phillips, L. S., Ockene, I. S., Kaplan, R. C., Sarto, G. E., Garcia, L., Howard, B. V. (2012). Determinants of Racial/Ethnic Disparities in Incidence of Clinical Diabetes in Postmenopausal Women in the United States: The Women’s Health Initiative 1993-2009, Diabetes Care, 35 (12), pp. 2226-2234.
McBurney, R.N., Hines, W.M., Vontungeln, L.S., Schnackenberg, L.K., Beger, R.D., Moland, C.L., Han, T., Fuscoe, J.C., Chang, C.W., Chen, J.J., Su, Z., Fan, X.H., Tong, W., Booth, S.A., Balasubramanian, R., Courchesne, P.L., Campbell, J.M., Graber, A., Guo, Y., Juhasz, P., Li, T.Y., Lynch, M.D., Morel, N.M., Plasterer, T.N., Takach, E.J., Zeng, C., Beland, F.A. (2012). The Liver Toxicity Biomarker Study Phase 1: Markers for the Effects of Tolcapone or Entacapone, Toxicological Pathology, 40(6), pp. 951-964.
Sturgeon, S.R., Balasubramanian, R., Schairer, C., Muss, H. B., Zeigler, R. G., Arcaro, K. F. (2012); Detection of Promoter Methylation of Tumor Suppressor Genes in Serum DNA of Breast Cancer Cases and Benign Breast Disease Controls, Epigenetics, 7 (11), pp. 1258-1267.
Crawford, L., Reeves, K. W., Luisi, N., Balasubramanian, R., Sturgeon, S. R. (2012); Perineal powder use and the risk of endometrial cancer in postmenopausal women, Cancer Causes and Control, 23 (10), pp. 1673-80.
Chan, K. H. K., Niu, T., Ma, Y., You, N. Y., Song, Y., Sobel, E., Hsu, Y., Balasubramanian, R., Qiao, Y., Tinker, L., Liu, S. (2013). Common genetic variants in Peroxisome Proliferator-activated Receptor γ (PPARG) and Clinical Diabetes Risk among Women’s Health Initiative Postmenopausal Women, Journal of Clinical Endocrinology & Metabolism, 98(3), pp. E600-604.
Qiao, Y., Ma, Y., Olendzki, B., Hebert, J. R., Balasubramanian, R., Rosal, M. C., Schneider, K. L., Liu, S., Sims, S., Hingle, M., Song, Y., Ockene, J. K., Sepavich, D. M., Shikany, J. M., Persuitte, G., Tinker, L. (2013). Racial/ethnic disparities in association between dietary quality and incident diabetes in postmenopausal women in the United States: the Women’s Health Initiative 1993-2005. Ethnicity and Health, 19(3): pp. 328-47. [PMCID: PMC3883944]
Ma, Y., Balasubramanian, R., Pagoto, S. L., Schneider, K. L., Hebert, J. R., Phillips, L. S., Goveas, J., Culver, A. L., Olendzki, B., Beck, J., Smoller, J. W., Sepavich, D. M., Ockene, J. K., Uebelacker, L., Zorn, M., Liu, S. (2013). Relations of depressive symptoms and antidepressant use to body mass index and selected biomarkers for diabetes and cardiovascular disease, American Journal of Public Health, 103 (8), pp. e34-43.
Ma, Y., Hebert, J.R., Balasubramanian, R., Wedick, N., Bird, C.E., Schneider, K.L., WactawskiWende, J., Phillips, L. S., Lamonte, M., Olendzki, B., Milagros, C.R., Ockene, J.K., Sepavich, D.M., Garcia, L., Howard, B. V., Mackey, R. H., Merriam, P. A., Liu, S., Johnson, K. C., Ockene, I. S., Manson, J. E. (2013). All-cause, Cardiovascular, and Cancer Mortality Rates in Postmenopausal White, Black, Hispanic, and Asian Women with and without Diabetes in the United States: The Women’s Health Initiative 1993-2009, American Journal of Epidemiology, 178(10): pp. 1533-41.
Balasubramanian, R.∗ , Houseman, E. A.∗ , Coull, B. A., Lev, M. H., Schwamm, L. H., Betensky, R. A. (2014). Variable importance in matched case-control studies in settings of high-dimensional data, Journal of the Royal Statistical Society, Series C, 63(4), pp. 639-655. ∗ equal contribution
Gu, X., Shapiro, D. S., Hughes, M. D., Balasubramanian, R. (2014). Stratified Weibull Regression Models for Interval Censored Data, R Journal, 6(1), pp. 31-40.
Sturgeon, S.R., Arcaro, K. F., Johnson, M. A., Balasubramanian, R., Zorn, M., Jerry, J., Schneider, S.S. (2014). DNA Methylation in Paired Breast Epithelial and White Blood Cells from Women Undergoing Reduction Mammoplasty. Anticancer Research, 34(6): pp. 2985-90.
Kintu, A., Hankinson, S. E., Balasubramanian, R., Ertel, K., Bangsberg, D. R., Haberer, J. E. (2015) Sexual relationships outside primary partnerships and abstinence are associated with lower adherence and adherence gaps: data from the Partners PrEP Ancillary Adherence Study, Journal of the Acquired Immune Deficiency Syndrome, 69 (1): pp. 36-43. PMCID: PMC4422183.
Gu, X., Ma, Y., Balasubramanian, R. (2015). Semi-parametric time to event models in the presence of error-prone, self-reported outcomes - with application to the Women’s Health Initiative, Annals of Applied Statistics, 9 (2), pp. 714-730. PMCID: PMC4729390.
Frisard, C., Gu, X., Whitcomb, B., Ma, Y., Pekow, P., Zorn, M., Sepavich, D., Balasubramanian, R. (2015). Marginal structural models for the estimation of the risk of Diabetes Mellitus in the presence of elevated depressive symptoms and antidepressant medication use in the Women’s Health Initiative. BMC Endocrine Disorders, 15(1): 56. PMCID: PMC4603353.
Gu, X., Balasubramanian, R. (2016). Study design for non-recurring, time to event outcomes in the presence of error-prone diagnostic tests or self-reports, Statistics in Medicine, 35(22), pp. 3961- 3975. PMCID: PMC5012924.
Ma, Y., Persuitte, G. M., Andrews, C., Hovey, K. M., LaMonte, M. J., Culver, A. L., Manson, J. E., Philips, L. S., Liu, S., Eaton, C., Martin, L. S., Howard, B. V., Balasubramanian, R., Bird, C. E., Ockene, I. S., Sturgeon, S. R., Ockene, J. K., Tinker, L., Nassir, R., Rossouw, J. (2016). Impact of Incident Diabetes on Atherosclerotic Cardiovascular Disease According to Statin Use History Among Postmenopausal Women, European Journal of Epidemiology, 31(8), pp. 747-761. PMCID: PMC5007161.
Asafu-Adjei, J., Tadesse, M. G., Coull, B. A., Balasubramanian, R., Lev, M. H., Schwamm, L. H., Betensky, R. A. (2017). Bayesian Variable Selection Methods for Matched Case-Control Studies. International Journal of Biostatistics, 13(1). PMCID: PMC5505078.
Sturgeon, S. R., Pilsner, R. J., Arcaro, K. F., Ikuma, K., Wu, H., Kim, S., Chopra-Tandon, N., Karpf, A. R., Ziegler, R. G., Schairer, C., Balasubramanian, R., Reckhow, D. A. (2017). White Blood Cell DNA Methylation and Risk of Breast Cancer in the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO), Breast Cancer Research, 19 (1), 94. PMCID: PMC5563066.
Balasubramanian, R., Fowler, M.G., Dominguez, K., Lockman, S., Tookey, P. A., Huong, N. N. G., Nesheim, S., Hughes, M. D., Lallemant, M., Toswill, J., Shaffer, N., Sherman, G., Palumbo, P., Shapiro, D. E. (2017): Time To First Positive HIV-1 DNA PCR May Differ With Antiretroviral Regimen In Infants Infected With Non-B Subtype HIV-1, AIDS, 31 (18), pp. 2465-2474. PMCID: PMC5710822.
Paynter, N. P., Balasubramanian, R., Gopal, S., Giulianini, F., Tinker, L., Manson, J.E., Cook, N. R., Albert, C. M., Clish, C., Rexrode, K. M. (2018). Metabolic Predictors of Incident Coronary Heart Disease in Women, Circulation, 137(8), pp. 841-853. PMCID: PMC5854187.
Xu, H., Gu, X., Tadesse, M. G., Balasubramanian, R. (2018). A modified Random Survival Forests algorithm for variable selection in the presence of imperfect self-reports or laboratory based diagnostic tests, Journal of Computational and Graphical Statistics, 27:4, pp. 763-772. PMCID: in process.
Tabung, F. K., Giovannucci, E. L., Giuliani, F., Liang, L., Chandler, P. D., Balasubramanian,R., Manson, J. E., Feliciano, E. M. C., Hayden, K. M., Van Horn, L., Rexrode, K. M. (2018). An empirical dietary inflammatory pattern score is associated with circulating inflammatory biomarkers in postmenopausal women, Journal of Nutrition, 148 (5), pp. 771 - 780. PMCID: PMC5972616.
Perez-Caraballo, A. M., Ma, Y., Ockene, J. K., Reeves, K. W., Balasubramanian, R., Stanczyk, F. Z., Allison, M. A., Chen, C., Wang, L., Manson, J. E., Sturgeon, S. R. (2018). Association of Urinary Levels of 6-sulfatoxymelatonin (aMT6s) with Prevalent and Incident Hypertension, Chronobiology International, 35 (8), pp. 1115-1121.
Xu, H.∗ , Qian, J.∗ , Paynter, N. P., Zhang, X., Whitcomb, B. W., Tworoger, S. S., Rexrode, K. M., Hankinson, S. E., Balasubramanian, R. (2019): Estimating the area under the Receiver Operating Characteristic curve in matched case control studies, Statistics in Medicine, 38 (3), pp. 437-451. ∗ equal contribution. PMCID in process.
Tabung, F. K., Balasubramanian, R., Liang, L., Clinton, S. K., Feliciano, E. M., Manson, J. E., Van Horn, L., Wacktawski-Wende, J., Clish, C. B., Giovannucci, E. L., Rexrode, K. M. (2019). Identifying metabolomic profiles of insulinemic dietary patterns, Metabolites, 9(6), 120. PMCID: PMC6630814
Tabung, F. K., Liang, L., Huang, T., Balasubramanian, R., Zhao, Y., Chandler, P. D., Manson, J. E., Feliciano, E. M., Hayden, K. M., Van Horn, L., Giovannucci, E. L., Rexrode, K. M. (2019). Identifying Metabolomic Profiles of Inflammatory Diets in Postmenopausal Women, Clinical Nutrition, 39(5):1478-1490. PMCID: PMC6918009
Chiou, S. H, Betensky, R., Balasubramanian, R. (2019). The missing indicator approach for censored covariates in logistic regression models, Annals of Epidemiology, 38, 57-64. PMCID: PMC6812630
Balasubramanian, R., Paynter, N. P., Manson, J., Chen, J.C., Vitolins, M., Clish, C., Albert, C., Rexrode, K. M. (2019). Metabolomic profiles associated with all-cause mortality in the Women’s Health Initiative, International Journal of Epidemiology, 49(1):289-300. PMCID: PMC7124492
Foulkes, A. S., Balasubramanian, R., Qian, J., Reilly, M. P. (2020). Non-random sampling results in biased estimates of transcriptome association, Scientific Reports, 10(1):6193. PMCID: PMC7148323
Paulette D Chandler, Raji Balasubramanian, Nina Paynter, Franco Giulianini, Teresa Fung, Lesley F Tinker, Linda Snetselaar, Simin Liu, Charles Eaton, Deirdre K Tobias, Fred K Tabung, JoAnn E Manson, Edward L Giovannucci, Clary Clish, Kathryn M Rexrode (2020). Metabolic signatures associated with Western and Prudent dietary patterns in women, American Journal of Clinical Nutrition, 112(2), p. 268-283. PMCID: PMC7398790
Tianyi Huang, Raji Balasubramanian, Yubing Yao, Clary B. Clish, Aladdin H. Shadyab, Buyun Liu, Shelley S. Tworoger, Kathryn M. Rexrode, JoAnn E. Manson, Laura D. Kubzansky & Susan E. Hankinson (2020). Associations of depression status with plasma levels of candidate lipid and amino acid metabolites: a meta-analysis of individual data from three independent samples of US postmenopausal women, Molecular Psychiatry.
Xiangdong Gu , Mahlet G Tadesse , Andrea S Foulkes , Yunsheng Ma and Raji Balasubramanian (2020). Bayesian variable selection for high dimensional predictors and self-reported outcomes, BMC Medical Informatics and Decision Making.
Raji Balasubramanian, Olga Demler, Marta Guasch-Ferré, Nina P. Paynter, Ryan Sheehan, Simin Liu, JoAnn E. Manson, Jordi Salas-Salvadó, Miguel Á Martínez-González, Frank B. Hu, Clary Clish, and Kathryn M. Rexrode (2020). Metabolomic Effects of Hormone Therapy and Associations with Coronary Heart Disease among Postmenopausal Women, Circulation: Genomic and Precision Medicine.
Oana A Zeleznik, Raji Balasubramanian, Yumeng Ren, Deirdre K Tobias, Bernard Rosner, Cheng Peng, Alaina M Bever, Lisa Frueh, Clary B Clish, Samia Mora, Frank Hu, A. Heather Eliassen (2020). Branched chain amino acids and risk of breast cancer, medRxiv 2020.08.31.20185470; doi: https://doi.org/10.1101/2020.08.31.20185470.
Oana A Zeleznik, Raji Balasubramanian, Yibai Zhao, Lisa Frueh, Sarah Jeanfavre, Julian Avila-Pacheco, Clary B Clish, Shelley S Tworoger, A Heather Eliassen (2020). Circulating amino acids, amino acid metabolites, dipeptides, and other cationic metabolites and risk of breast cancer, medRxiv 2020.09.01.20185835; doi: https://doi.org/10.1101/2020.09.01.20185835.